If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 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'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ), 'gf_id' => 'HOM05D000567', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000567' ), 'data_identifier' => 'HOM05D000567', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000567', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '974', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09930' => 'bna', 'A01p21170' => 'bna', 'A03p49810' => 'bna', 'A04p34400' => 'bna', 'A05p01290' => 'bna', 'A05p24680' => 'bna', 'A06p45590' => 'bna', 'A06p45630' => 'bna', 'A06p45690' => 'bna', 'A09p22520' => 'bna', 'A09p22570' => 'bna', 'A09p22590' => 'bna', 'A10p00640' => 'bna', 'Aa31LG1G10630' => 'aar', 'Aa31LG1G27860' => 'aar', 'Aa31LG1G3420' => 'aar', 'Aa31LG1G3430' => 'aar', 'Aa31LG2G12490' => 'aar', 'Aa31LG2G13350' => 'aar', 'Aa31LG3G400' => 'aar', 'Aa31LG5G1070' => 'aar', 'Aa31LG6G610' => 'aar', 'Aa31LG9G15230' => 'aar', 'Aa31LG9G6130' => 'aar', 'Aa31sc16G50' => 'aar', 'Aa31sc666G10' => 'aar', 'Aa31sc666G20' => 'aar', 'Aa31sc676G10' => 'aar', 'Aa31sc676G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.602' => 'aag', 'Actinidia07970' => 'ach', 'Actinidia07995' => 'ach', 'Actinidia14806' => 'ach', 'Actinidia20248' => 'ach', 'Actinidia20274' => 'ach', 'Actinidia21175' => 'ach', 'Actinidia24957' => 'ach', 'Actinidia25964' => 'ach', 'Actinidia27284' => 'ach', 'Actinidia27560' => 'ach', 'Actinidia28094' => 'ach', 'Actinidia28511' => 'ach', 'Actinidia33765' => 'ach', 'Ah.02g111700' => 'amhyb', 'Ah.02g111710' => 'amhyb', 'Ah.04g164040' => 'amhyb', 'Ah.05g179120' => 'amhyb', 'Ah.05g179450' => 'amhyb', 'Ah.07g198060' => 'amhyb', 'Ah.07g200390' => 'amhyb', 'Ah.11g049860' => 'amhyb', 'Ah.12g055050' => 'amhyb', 'AL1G11120' => 'aly', 'AL1G11200' => 'aly', 'AL1G46900' => 'aly', 'AL4G45930' => 'aly', 'AL6G52590' => 'aly', 'AL7G36650' => 'aly', 'AL7G38580' => 'aly', 'AL8G11500' => 'aly', 'AL8G11580' => 'aly', 'Aqoxy1G04086' => 'aox', 'Aqoxy3G00525' => 'aox', 'Aqoxy3G02345' => 'aox', 'Aqoxy3G03768' => 'aox', 'Aqoxy5G04329' => 'aox', 'Aqoxy6G00026' => 'aox', 'Aqoxy6G02613' => 'aox', 'Aqoxy7G00070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RH9QK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KRW4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6187DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83FN4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96VLZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D615WN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7A8WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV9T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BKZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPIF41' => 'arhy', 'AT1G01260' => 'ath', 'AT1G32640' => 'ath', 'AT2G46510' => 'ath', 'AT4G00870' => 'ath', 'AT4G16430' => 'ath', 'AT4G17880' => 'ath', 'AT5G46760' => 'ath', 'AT5G46830' => 'ath', 'ATR0090G036' => 'atr', 'ATR0602G255' => 'atr', 'ATR0665G389' => 'atr', 'ATR0686G241' => 'atr', 'ATR0712G110' => 'atr', 'ATR0824G235' => 'atr', 'ATR1089G092' => 'atr', 'Atru.chr5.1624' => 'acertr', 'Atru.chr5.681' => 'acertr', 'Atru.chr5.682' => 'acertr', 'Atru.chr5.745' => 'acertr', 'Atru.chr6.1707' => 'acertr', 'Atru.chr9.1871' => 'acertr', 'AUR62004505' => 'cqu', 'AUR62004545' => 'cqu', 'AUR62007059' => 'cqu', 'AUR62007060' => 'cqu', 'AUR62007294' => 'cqu', 'AUR62011907' => 'cqu', 'AUR62011908' => 'cqu', 'AUR62018713' => 'cqu', 'AUR62019922' => 'cqu', 'AUR62019923' => 'cqu', 'AUR62022659' => 'cqu', 'AUR62023449' => 'cqu', 'AUR62032220' => 'cqu', 'AUR62032221' => 'cqu', 'BcaB01g03210' => 'bca', 'BcaB03g12193' => 'bca', 'BcaB03g13569' => 'bca', 'BcaB03g13718' => 'bca', 'BcaB07g30813' => 'bca', 'BcaB07g30814' => 'bca', 'BcaB07g30815' => 'bca', 'BcaB07g30816' => 'bca', 'BcaB07g30817' => 'bca', 'BcaB07g30818' => 'bca', 'BcaB07g30822' => 'bca', 'BcaB07g32956' => 'bca', 'BcaC02g07035' => 'bca', 'BcaC02g07036' => 'bca', 'BcaC04g21675' => 'bca', 'BcaC04g21678' => 'bca', 'BcaC04g21685' => 'bca', 'BcaC05g27836' => 'bca', 'BcaC05g27837' => 'bca', 'BcaC06g31441' => 'bca', 'BcaC06g31449' => 'bca', 'BcaC06g34339' => 'bca', 'BcaC06g34344' => 'bca', 'BcaC06g34350' => 'bca', 'BcaC07g37596' => 'bca', 'BcaC09g50342' => 'bca', 'BcaC09g51591' => 'bca', 'BcaNung00047' => 'bca', 'BcaNung00198' => 'bca', 'BcaNung06885' => 'bca', 'BolC1t01134H' => 'bol', 'BolC1t02591H' => 'bol', 'BolC4t21796H' => 'bol', 'BolC4t28707H' => 'bol', 'BolC5t28855H' => 'bol', 'BolC5t32569H' => 'bol', 'BolC7t43546H' => 'bol', 'BolC7t43553H' => 'bol', 'BolC7t43554H' => 'bol', 'BolC7t45309H' => 'bol', 'BolC8t47950H' => 'bol', 'BolC9t55747H' => 'bol', 'BolC9t55762H' => 'bol', 'BolC9t55763H' => 'bol', 'BraA01t00937Z' => 'bra', 'BraA01t02027Z' => 'bra', 'BraA03t14076Z' => 'bra', 'BraA04t18901Z' => 'bra', 'BraA05t19127Z' => 'bra', 'BraA05t21352Z' => 'bra', 'BraA06t27431Z' => 'bra', 'BraA06t27432Z' => 'bra', 'BraA06t27438Z' => 'bra', 'BraA09t37859Z' => 'bra', 'BraA09t37863Z' => 'bra', 'BraA09t37866Z' => 'bra', 'BraA10t42342Z' => 'bra', 'C01p11710' => 'bna', 'C01p26440' => 'bna', 'C04p01420' => 'bna', 'C04p72200' => 'bna', 'C05p00690' => 'bna', 'C05p38350' => 'bna', 'C07p30060' => 'bna', 'C07p30130' => 'bna', 'C07p30190' => 'bna', 'C07p47870' => 'bna', 'C09p28850' => 'bna', 'C09p28960' => 'bna', 'C09p29000' => 'bna', 'CAN.G1045.42' => 'can', 'CAN.G1216.16' => 'can', 'CAN.G1415.24' => 'can', 'CAN.G271.3' => 'can', 'CAN.G298.8' => 'can', 'CAN.G346.13' => 'can', 'CAN.G382.7' => 'can', 'CAN.G567.91' => 'can', 'CAN.G611.5' => 'can', 'CAN.G771.20' => 'can', 'CAN.G792.24' => 'can', 'CANSAT21G0209' => 'cansat', 'CANSAT21G2162' => 'cansat', 'CANSAT54G0568' => 'cansat', 'CANSAT56G0053' => 'cansat', 'CANSAT56G1433' => 'cansat', 'CARHR001200' => 'chi', 'CARHR032070' => 'chi', 'CARHR141840' => 'chi', 'CARHR174620' => 'chi', 'CARHR174740' => 'chi', 'CARHR222800' => 'chi', 'CARHR224600' => 'chi', 'CARHR249460' => 'chi', 'Carub.0001s0095' => 'cru', 'Carub.0001s3102' => 'cru', 'Carub.0004s1691' => 'cru', 'Carub.0004s2921' => 'cru', 'Carub.0006s3589' => 'cru', 'Carub.0007s2348' => 'cru', 'Carub.0007s2510' => 'cru', 'Carub.0008s0109' => 'cru', 'Carub.0008s0116' => 'cru', 'Ca_06081_v3' => 'car', 'Ca_08657_v3' => 'car', 'Ca_09515_v3' => 'car', 'Ca_22640_v3' => 'car', 'Ca_23495_v3' => 'car', 'Ca_23526_v3' => 'car', 'Ca_30871_v3' => 'car', 'Cc01_g18590' => 'ccan', 'Cc02_g39470' => 'ccan', 'Cc02_g39830' => 'ccan', 'Cc08_g02790' => 'ccan', 'Cc08_g16790' => 'ccan', 'CDE02G1348' => 'cde', 'CDE03G0230' => 'cde', 'CDE06G2328' => 'cde', 'CDE06G2734' => 'cde', 'CDE08G1255' => 'cde', 'CDE10G0498' => 'cde', 'CDE10G1022' => 'cde', 'CDE12G0405' => 'cde', 'Cfa002377' => 'cfa', 'Cfa003007' => 'cfa', 'Cfa003753' => 'cfa', 'Cfa003790' => 'cfa', 'Cfa011917' => 'cfa', 'Ciclev10011214m.g' => 'ccl', 'Ciclev10019339m.g' => 'ccl', 'Ciclev10019730m.g' => 'ccl', 'Ciclev10019749m.g' => 'ccl', 'Ciclev10019816m.g' => 'ccl', 'CiPaw.01G077000' => 'cil', 'CiPaw.01G080600' => 'cil', 'CiPaw.02G066100' => 'cil', 'CiPaw.03G259800' => 'cil', 'CiPaw.04G183900' => 'cil', 'CiPaw.04G184000' => 'cil', 'CiPaw.04G184100' => 'cil', 'CiPaw.11G093600' => 'cil', 'CiPaw.11G111800' => 'cil', 'CiPaw.12G064000' => 'cil', 'CiPaw.12G076800' => 'cil', 'CiPaw.12G076900' => 'cil', 'CiPaw.15G123800' => 'cil', 'ClCG06G002770' => 'cla', 'ClCG07G000790' => 'cla', 'ClCG10G000800' => 'cla', 'ClCG10G001590' => 'cla', 'ClCG11G010200' => 'cla', 'COL.COLO4_05294' => 'col', 'COL.COLO4_05586' => 'col', 'COL.COLO4_06221' => 'col', 'COL.COLO4_06275' => 'col', 'COL.COLO4_10804' => 'col', 'COL.COLO4_17030' => 'col', 'COL.COLO4_20339' => 'col', 'Cpa.g.c43518' => 'cpa', 'Cpa.g.c45808' => 'cpa', 'Cpa.g.sc141.19' => 'cpa', 'Cpa.g.sc1892.1' => 'cpa', 'Cpa.g.sc2702.1' => 'cpa', 'Cpa.g.sc50.53' => 'cpa', 'Cpa.g.sc71.72' => 'cpa', 'CsaV3_2G010120' => 'csa', 'CsaV3_3G000850' => 'csa', 'CsaV3_3G001710' => 'csa', 'CsaV3_3G007980' => 'csa', 'CsaV3_3G022420' => 'csa', 'CsaV3_3G049150' => 'csa', 'CsaV3_6G008940' => 'csa', 'CSS0003529' => 'camsi', 'CSS0004820' => 'camsi', 'CSS0008194' => 'camsi', 'CSS0011668' => 'camsi', 'CSS0012339' => 'camsi', 'CSS0026655' => 'camsi', 'CSS0029111' => 'camsi', 'CSS0029763' => 'camsi', 'CSS0037363' => 'camsi', 'CSS0037963' => 'camsi', 'CSS0038382' => 'camsi', 'CSS0043049' => 'camsi', 'CSS0047466' => 'camsi', 'CSS0048738' => 'camsi', 'DCAR_000434' => 'dca', 'DCAR_005396' => 'dca', 'DCAR_005631' => 'dca', 'DCAR_006548' => 'dca', 'DCAR_006550' => 'dca', 'DCAR_006551' => 'dca', 'DCAR_006552' => 'dca', 'DCAR_006987' => 'dca', 'DCAR_006988' => 'dca', 'DCAR_008270' => 'dca', 'DCAR_018460' => 'dca', 'DCAR_024963' => 'dca', 'DCAR_025258' => 'dca', 'Dinv03877' => 'din', 'Dinv05049' => 'din', 'Dinv16325' => 'din', 'Dinv19994' => 'din', 'Dinv20000' => 'din', 'Dinv21449' => 'din', 'Dinv21955' => 'din', 'Dinv22451' => 'din', 'Dinv22452' => 'din', 'Dinv25216' => 'din', 'Dinv28959' => 'din', 'Dinv32599' => 'din', 'Dinv34592' => 'din', 'Dinv35122' => 'din', 'Duzib084G0664' => 'dzi', 'Duzib084G0907' => 'dzi', 'Duzib133G0155' => 'dzi', 'Duzib133G0663' => 'dzi', 'Duzib133G0783' => 'dzi', 'Duzib138G0459' => 'dzi', 'Duzib205G1419' => 'dzi', 'Duzib205G1461' => 'dzi', 'Duzib268G0167' => 'dzi', 'Duzib268G1595' => 'dzi', 'ECA233G5522' => 'eca', 'ECA234G4127' => 'eca', 'ECA236G2776' => 'eca', 'ECA240G4588' => 'eca', 'ECA246G4746' => 'eca', 'ECA247G2598' => 'eca', 'EL10Ac1g00203' => 'bvu', 'EL10Ac1g00253' => 'bvu', 'EL10Ac5g10435' => 'bvu', 'EL10Ac5g10436' => 'bvu', 'EL10Ac5g12117' => 'bvu', 'EL10Ac5g12420' => 'bvu', 'EL10Ac5g12422' => 'bvu', 'EL10Ac7g17404' => 'bvu', 'Eucgr.B00713' => 'egr', 'Eucgr.E00019' => 'egr', 'Eucgr.E00047' => 'egr', 'Eucgr.E00277' => 'egr', 'Eucgr.E01039' => 'egr', 'Eucgr.E01042' => 'egr', 'Eucgr.E01043' => 'egr', 'Eucgr.E01045' => 'egr', 'Eucgr.E01046' => 'egr', 'Eucgr.E01047' => 'egr', 'Eucgr.E01049' => 'egr', 'Eucgr.K03293' => 'egr', 'FAN01G2125' => 'fan', 'FAN01G2760' => 'fan', 'FAN03G0525' => 'fan', 'FAN03G2897' => 'fan', 'FAN04G0303' => 'fan', 'FAN04G1775' => 'fan', 'FAN04G2758' => 'fan', 'FAN06G1790' => 'fan', 'FAN06G2064' => 'fan', 'FAN06G4092' => 'fan', 'FAN06G4801' => 'fan', 'FAN08G1577' => 'fan', 'FAN08G2382' => 'fan', 'FAN08G3672' => 'fan', 'FAN09G0026' => 'fan', 'FAN10G0046' => 'fan', 'FAN10G1429' => 'fan', 'FAN10G2162' => 'fan', 'FAN10G3227' => 'fan', 'FAN12G0624' => 'fan', 'FAN13G0531' => 'fan', 'FAN13G0763' => 'fan', 'FAN13G2448' => 'fan', 'FAN15G1029' => 'fan', 'FAN15G1505' => 'fan', 'FAN18G1563' => 'fan', 'FAN18G1572' => 'fan', 'FAN20G1353' => 'fan', 'FAN24G1555' => 'fan', 'FAN27G0637' => 'fan', 'FvH4_1g13600' => 'fve', 'FvH4_1g13601' => 'fve', 'FvH4_2g22150' => 'fve', 'FvH4_4g17280' => 'fve', 'FvH4_5g10850' => 'fve', 'FvH4_5g10851' => 'fve', 'FvH4_5g22100' => 'fve', 'FvH4_5g23290' => 'fve', 'FvH4_6g24370' => 'fve', 'FvH4_6g25910' => 'fve', 'FvH4_7g16800' => 'fve', 'FvH4_7g17380' => 'fve', 'Glyma.01G018400' => 'gma', 'Glyma.01G096600' => 'gma', 'Glyma.02G088050' => 'gma', 'Glyma.03G258100' => 'gma', 'Glyma.07G051500' => 'gma', 'Glyma.07G055200' => 'gma', 'Glyma.08G271900' => 'gma', 'Glyma.09G204500' => 'gma', 'Glyma.10G034300' => 'gma', 'Glyma.13G120700' => 'gma', 'Glyma.14G117300' => 'gma', 'Glyma.16G020500' => 'gma', 'Glyma.16G023900' => 'gma', 'Glyma.17G209000' => 'gma', 'Glyma.19G256700' => 'gma', 'Glyma.20G003000' => 'gma', 'Gohir.A03G000700' => 'ghi', 'Gohir.A07G134800' => 'ghi', 'Gohir.A08G109900' => 'ghi', 'Gohir.A08G123300' => 'ghi', 'Gohir.A08G156400' => 'ghi', 'Gohir.A09G201500' => 'ghi', 'Gohir.A11G097500' => 'ghi', 'Gohir.A11G099900' => 'ghi', 'Gohir.A11G128600' => 'ghi', 'Gohir.A12G115400' => 'ghi', 'Gohir.A12G115450' => 'ghi', 'Gohir.A12G208200' => 'ghi', 'Gohir.A12G240400' => 'ghi', 'Gohir.D03G171500' => 'ghi', 'Gohir.D07G139700' => 'ghi', 'Gohir.D08G122800' => 'ghi', 'Gohir.D08G144700' => 'ghi', 'Gohir.D08G146050' => 'ghi', 'Gohir.D08G176900' => 'ghi', 'Gohir.D09G193200' => 'ghi', 'Gohir.D11G102200' => 'ghi', 'Gohir.D11G104500' => 'ghi', 'Gohir.D11G134400' => 'ghi', 'Gohir.D12G119000' => 'ghi', 'Gohir.D12G119050' => 'ghi', 'Gohir.D12G210800' => 'ghi', 'Gohir.D12G241700' => 'ghi', 'Gorai.001G151700' => 'gra', 'Gorai.003G182100' => 'gra', 'Gorai.004G129600' => 'gra', 'Gorai.004G149500' => 'gra', 'Gorai.004G151500' => 'gra', 'Gorai.004G184800' => 'gra', 'Gorai.006G216700' => 'gra', 'Gorai.007G109300' => 'gra', 'Gorai.007G111800' => 'gra', 'Gorai.007G143800' => 'gra', 'Gorai.008G128800' => 'gra', 'Gorai.008G129000' => 'gra', 'Gorai.008G226300' => 'gra', 'Gorai.008G259000' => 'gra', 'GSVIVG01000771001' => 'vvi', 'GSVIVG01013156001' => 'vvi', 'GSVIVG01019659001' => 'vvi', 'GSVIVG01027162001' => 'vvi', 'GSVIVG01027412001' => 'vvi', 'GSVIVG01038746001' => 'vvi', 'HanXRQChr03g0086191' => 'han', 'HanXRQChr03g0086201' => 'han', 'HanXRQChr03g0086211' => 'han', 'HanXRQChr05g0154351' => 'han', 'HanXRQChr06g0167481' => 'han', 'HanXRQChr06g0170931' => 'han', 'HanXRQChr07g0200051' => 'han', 'HanXRQChr09g0256311' => 'han', 'HanXRQChr09g0256321' => 'han', 'HanXRQChr10g0281311' => 'han', 'HanXRQChr13g0414301' => 'han', 'HanXRQChr15g0468041' => 'han', 'HanXRQChr15g0478061' => 'han', 'HanXRQChr16g0524231' => 'han', 'HanXRQChr16g0524591' => 'han', 'HanXRQChr17g0535851' => 'han', 'HanXRQChr17g0562881' => 'han', 'HanXRQChr17g0563221' => 'han', 'HanXRQChr17g0563241' => 'han', 'Haze_08226' => 'cav', 'Haze_09180' => 'cav', 'Haze_15670' => 'cav', 'Haze_15712' => 'cav', 'Haze_18278' => 'cav', 'Haze_24577' => 'cav', 'Hma1.2p1_0180F.1_g079870' => 'hma', 'Hma1.2p1_0303F.1_g119100' => 'hma', 'Hma1.2p1_0309F.1_g120560' => 'hma', 'Hma1.2p1_0436F.1_g152800' => 'hma', 'Hma1.2p1_0456F.1_g156680' => 'hma', 'Hma1.2p1_0456F.1_g156690' => 'hma', 'Hma1.2p1_0975F.1_g243190' => 'hma', 'Hma1.2p1_1063F.1_g253580' => 'hma', 'Hma1.2p1_2704F.1_g327120' => 'hma', 'Hma1.2p1_2910F.1_g330160' => 'hma', 'Hma1.2p1_3059F.1_g332240' => 'hma', 'HPP92_001555' => 'vpl', 'HPP92_003518' => 'vpl', 'HPP92_014630' => 'vpl', 'HPP92_014631' => 'vpl', 'HPP92_020644' => 'vpl', 'HPP92_020645' => 'vpl', 'HPP92_021498' => 'vpl', 'HPP92_021521' => 'vpl', 'HPP92_022508' => 'vpl', 'HPP92_024617' => 'vpl', 'Lalb_Chr01g0019771' => 'lal', 'Lalb_Chr04g0254241' => 'lal', 'Lalb_Chr04g0254401' => 'lal', 'Lalb_Chr05g0216071' => 'lal', 'Lalb_Chr05g0224061' => 'lal', 'Lalb_Chr09g0325651' => 'lal', 'Lalb_Chr09g0332331' => 'lal', 'Lalb_Chr09g0332341' => 'lal', 'Lalb_Chr09g0332351' => 'lal', 'Lalb_Chr10g0100601' => 'lal', 'Lalb_Chr15g0076311' => 'lal', 'Lalb_Chr17g0342921' => 'lal', 'Lalb_Chr18g0044581' => 'lal', 'Lj1A311T4' => 'lonja', 'Lj1A313T6' => 'lonja', 'Lj1C313T2' => 'lonja', 'Lj1C61T4' => 'lonja', 'Lj1g0010959' => 'lja', 'Lj1P448T4' => 'lonja', 'Lj2A156T54' => 'lonja', 'Lj2g0027797' => 'lja', 'Lj2P239T15' => 'lonja', 'Lj3g0014837' => 'lja', 'Lj3g0017241' => 'lja', 'Lj3g0020707' => 'lja', 'Lj4g0009423' => 'lja', 'Lj6g0022099' => 'lja', 'Lj7A495T60' => 'lonja', 'Lj7P499T12' => 'lonja', 'Lj8A300T31' => 'lonja', 'Lj9E599T1' => 'lonja', 'Lj9P599T31' => 'lonja', 'Lj9P603T27' => 'lonja', 'Lsat_1_v5_gn_3_140101' => 'lsa', 'Lsat_1_v5_gn_3_17861' => 'lsa', 'Lsat_1_v5_gn_4_32381' => 'lsa', 'Lsat_1_v5_gn_4_33781' => 'lsa', 'Lsat_1_v5_gn_6_65141' => 'lsa', 'Lsat_1_v5_gn_6_81901' => 'lsa', 'Lsat_1_v5_gn_9_9421' => 'lsa', 'Manes.01G054100' => 'mes', 'Manes.01G054300' => 'mes', 'Manes.01G056200' => 'mes', 'Manes.01G199900' => 'mes', 'Manes.01G241700' => 'mes', 'Manes.01G245600' => 'mes', 'Manes.02G002300' => 'mes', 'Manes.02G002400' => 'mes', 'Manes.05G018200' => 'mes', 'Manes.05G022000' => 'mes', 'Manes.10G083400' => 'mes', 'Manes.15G182700' => 'mes', 'Manes.16G094302' => 'mes', 'Manes.17G016000' => 'mes', 'Mapoly0018s0018' => 'mpo', 'Mapoly0018s0019' => 'mpo', 'Mapoly0028s0058' => 'mpo', 'Mapoly0029s0130' => 'mpo', 'MapolyY_B0018' => 'mpo', 'MBI04_g23599_MAGBIO' => 'mbi', 'MBI06_g16623_MAGBIO' => 'mbi', 'MBI07_g37058_MAGBIO' => 'mbi', 'MBI12_g32490_MAGBIO' => 'mbi', 'MD00G1137900' => 'mdo', 'MD01G1082700' => 'mdo', 'MD01G1086800' => 'mdo', 'MD01G1086900' => 'mdo', 'MD03G1096500' => 'mdo', 'MD05G1202300' => 'mdo', 'MD05G1202500' => 'mdo', 'MD05G1202900' => 'mdo', 'MD06G1119900' => 'mdo', 'MD06G1120000' => 'mdo', 'MD06G1120100' => 'mdo', 'MD06G1120200' => 'mdo', 'MD07G1151000' => 'mdo', 'MD10G1190000' => 'mdo', 'MD11G1120400' => 'mdo', 'MD11G1145000' => 'mdo', 'MD11G1254000' => 'mdo', 'MD11G1254100' => 'mdo', 'MD14G1126900' => 'mdo', 'MD14G1127000' => 'mdo', 'MD14G1137200' => 'mdo', 'Medtr5g030420' => 'mtr', 'Medtr5g030430' => 'mtr', 'Medtr7g096350' => 'mtr', 'Medtr7g117670' => 'mtr', 'Medtr8g024770' => 'mtr', 'Medtr8g024790' => 'mtr', 'Medtr8g027495' => 'mtr', 'Medtr8g067280' => 'mtr', 'MELO3C003412.2' => 'cme', 'MELO3C006016.2' => 'cme', 'MELO3C008668.2' => 'cme', 'MELO3C013772.2' => 'cme', 'MELO3C013851.2' => 'cme', 'MELO3C022250.2' => 'cme', 'MELO3C024041.2' => 'cme', 'Migut.B01884' => 'egut', 'Migut.B01912' => 'egut', 'Migut.D00401' => 'egut', 'Migut.E00934' => 'egut', 'Migut.N01539' => 'egut', 'Migut.O00642' => 'egut', 'MSTRG.12159' => 'ama', 'MSTRG.17351' => 'ama', 'MSTRG.17380' => 'ama', 'MSTRG.17480' => 'ama', 'MSTRG.18305' => 'ama', 'MSTRG.1986' => 'ama', 'MSTRG.20908' => 'ama', 'MSTRG.28268' => 'ama', 'MSTRG.28283' => 'ama', 'MSTRG.4805' => 'ama', 'Nitab4.5_0000023g0080' => 'nta', 'Nitab4.5_0000258g0210' => 'nta', 'Nitab4.5_0000307g0240' => 'nta', 'Nitab4.5_0000768g0030' => 'nta', 'Nitab4.5_0000799g0020' => 'nta', 'Nitab4.5_0000804g0160' => 'nta', 'Nitab4.5_0001012g0020' => 'nta', 'Nitab4.5_0001044g0090' => 'nta', 'Nitab4.5_0001117g0060' => 'nta', 'Nitab4.5_0001117g0070' => 'nta', 'Nitab4.5_0001763g0070' => 'nta', 'Nitab4.5_0001765g0050' => 'nta', 'Nitab4.5_0001962g0010' => 'nta', 'Nitab4.5_0002539g0040' => 'nta', 'Nitab4.5_0002614g0020' => 'nta', 'Nitab4.5_0003078g0010' => 'nta', 'Nitab4.5_0004506g0010' => 'nta', 'Nitab4.5_0007001g0030' => 'nta', 'Nitab4.5_0007903g0010' => 'nta', 'Nitab4.5_0011880g0030' => 'nta', 'Nn1g00404' => 'nnu', 'Nn1g08041' => 'nnu', 'Nn3g17161' => 'nnu', 'Nn5g27183' => 'nnu', 'Nn6g34478' => 'nnu', 'Nn6g35110' => 'nnu', 'Nn7g38083' => 'nnu', 'Oeu004955.1' => 'oeu', 'Oeu004981.2' => 'oeu', 'Oeu004992.1' => 'oeu', 'Oeu007884.1' => 'oeu', 'Oeu008703.1' => 'oeu', 'Oeu010116.1' => 'oeu', 'Oeu017027.1' => 'oeu', 'Oeu025805.1' => 'oeu', 'Oeu035807.1' => 'oeu', 'Oeu035808.1' => 'oeu', 'Oeu042960.2' => 'oeu', 'Oeu043230.1' => 'oeu', 'Oeu058812.1' => 'oeu', 'Oeu062967.2' => 'oeu', 'Os01g0235700' => 'osa', 'Os01g0705700' => 'osa', 'Os08g0543700' => 'osa', 'Os09g0519100' => 'osa', 'Os10g0575000' => 'osa', 'Peaxi162Scf00045g00011' => 'pax', 'Peaxi162Scf00087g00075' => 'pax', 'Peaxi162Scf00087g00093' => 'pax', 'Peaxi162Scf00345g00021' => 'pax', 'Peaxi162Scf00460g00011' => 'pax', 'Peaxi162Scf00716g00024' => 'pax', 'Peaxi162Scf00767g00043' => 'pax', 'Peaxi162Scf01530g00011' => 'pax', 'PGR031G1756' => 'pgr', 'PGR042G0932' => 'pgr', 'PGR042G2065' => 'pgr', 'PGR044G0257' => 'pgr', 'PGR119G2206' => 'pgr', 'PGSC0003DMG400000232' => 'stu', 'PGSC0003DMG400001161' => 'stu', 'PGSC0003DMG400005525' => 'stu', 'PGSC0003DMG400005528' => 'stu', 'PGSC0003DMG400005860' => 'stu', 'PGSC0003DMG400007010' => 'stu', 'PGSC0003DMG400012237' => 'stu', 'PGSC0003DMG400017535' => 'stu', 'PGSC0003DMG400018332' => 'stu', 'PGSC0003DMG400020066' => 'stu', 'PGSC0003DMG401010822' => 'stu', 'PGSC0003DMG402010822' => 'stu', 'PGSC0003DMG403010822' => 'stu', 'PGSC0003DMG404010822' => 'stu', 'Phvul.001G052200' => 'pvu', 'Phvul.001G052400' => 'pvu', 'Phvul.002G141500' => 'pvu', 'Phvul.003G285700' => 'pvu', 'Phvul.006G011220' => 'pvu', 'Phvul.006G114000' => 'pvu', 'Phvul.007G179100' => 'pvu', 'Phvul.009G207550' => 'pvu', 'Phvul.010G114800' => 'pvu', 'Phvul.010G117900' => 'pvu', 'Potri.001G083500' => 'ptr', 'Potri.001G142200' => 'ptr', 'Potri.002G042000' => 'ptr', 'Potri.002G172101' => 'ptr', 'Potri.002G176900' => 'ptr', 'Potri.003G092200' => 'ptr', 'Potri.003G147300' => 'ptr', 'Potri.005G221100' => 'ptr', 'Potri.014G099700' => 'ptr', 'Potri.014G103700' => 'ptr', 'Pp3c11_15370' => 'ppa', 'Pp3c11_20550' => 'ppa', 'Pp3c11_23320' => 'ppa', 'Pp3c13_11550' => 'ppa', 'Pp3c16_21680' => 'ppa', 'Pp3c18_14850' => 'ppa', 'Pp3c3_9950' => 'ppa', 'Pp3c3_9970' => 'ppa', 'Pp3c6_3190' => 'ppa', 'Pp3c7_11010' => 'ppa', 'Pp3c7_1720' => 'ppa', 'Prupe.2G190100' => 'ppe', 'Prupe.2G195300' => 'ppe', 'Prupe.5G035400' => 'ppe', 'Prupe.5G087600' => 'ppe', 'Prupe.5G087900' => 'ppe', 'Prupe.5G130300' => 'ppe', 'Prupe.5G130400' => 'ppe', 'Prupe.5G130500' => 'ppe', 'Prupe.5G130600' => 'ppe', 'Prupe.5G130700' => 'ppe', 'Prupe.8G228700' => 'ppe', 'Psat0s1094g0040' => 'psa', 'Psat2g136720' => 'psa', 'Psat3g059400' => 'psa', 'Psat4g117960' => 'psa', 'Psat4g161720' => 'psa', 'Psat4g162880' => 'psa', 'Psat5g016640' => 'psa', 'PSO063G2343' => 'pso', 'PSO063G2560' => 'pso', 'PSO135G0677' => 'pso', 'PSO170G1723' => 'pso', 'PSO384G1866' => 'pso', 'PSO384G4977' => 'pso', 'PSO480G0001' => 'pso', 'PSO782G1392' => 'pso', 'QL02p027889' => 'qlo', 'QL04p060462' => 'qlo', 'QL06p019277' => 'qlo', 'QL08p006831' => 'qlo', 'QL08p046679' => 'qlo', 'QL10p029445' => 'qlo', 'QL11p015386' => 'qlo', 'QL11p015439' => 'qlo', 'QL11p016154' => 'qlo', 'QL12p005169' => 'qlo', 'QL12p043055' => 'qlo', 'RcHm_v2.0_Chr1g0360001' => 'rch', 'RcHm_v2.0_Chr1g0360811' => 'rch', 'RcHm_v2.0_Chr5g0055891' => 'rch', 'RcHm_v2.0_Chr6g0268091' => 'rch', 'RcHm_v2.0_Chr6g0268101' => 'rch', 'RcHm_v2.0_Chr6g0281801' => 'rch', 'RcHm_v2.0_Chr6g0288981' => 'rch', 'RcHm_v2.0_Chr7g0187141' => 'rch', 'RcHm_v2.0_Chr7g0187261' => 'rch', 'RcHm_v2.0_Chr7g0209751' => 'rch', 'RcHm_v2.0_Chr7g0212241' => 'rch', 'RcHm_v2.0_Chr7g0228701' => 'rch', 'Rhsim01G0178400' => 'rsi', 'Rhsim01G0267800' => 'rsi', 'Rhsim02G0252700' => 'rsi', 'Rhsim07G0003400' => 'rsi', 'Rhsim07G0077600' => 'rsi', 'Rhsim07G0127200' => 'rsi', 'Rhsim07G0127300' => 'rsi', 'Rhsim12G0162700' => 'rsi', 'RhsimUnG0086900' => 'rsi', 'RhsimUnG0087000' => 'rsi', 'Sabra01G0060100' => 'sbr', 'Sabra01G0110800' => 'sbr', 'Sabra02G0033800' => 'sbr', 'Sabra02G0136800' => 'sbr', 'Sabra02G0140700' => 'sbr', 'Sabra03G0061600' => 'sbr', 'Sabra03G0107100' => 'sbr', 'Sabra05G0170100' => 'sbr', 'Sabra14G0073100' => 'sbr', 'Sabra14G0076300' => 'sbr', 'SalBow3G1784' => 'sbo', 'SalBow3G2717' => 'sbo', 'SalBow3G3298' => 'sbo', 'SalBow4G0987' => 'sbo', 'SalBow4G3056' => 'sbo', 'SalBow5G1352' => 'sbo', 'SalBow6G2333' => 'sbo', 'SalBow6G4334' => 'sbo', 'SalBow6G4412' => 'sbo', 'SalBow6G5052' => 'sbo', 'SalBow6G5940' => 'sbo', 'Sc01g0002610' => 'sci', 'Sc05g0000840' => 'sci', 'Sc07g0008690' => 'sci', 'Sc07g0010210' => 'sci', 'Sc22g0001530' => 'sci', 'Sc22g0004690' => 'sci', 'Sc23g0001880' => 'sci', 'Sc23g0002040' => 'sci', 'Sed0003031' => 'sed', 'Sed0004944' => 'sed', 'Sed0005892' => 'sed', 'Sed0006282' => 'sed', 'Sed0006855' => 'sed', 'Sed0008015' => 'sed', 'Sed0010477' => 'sed', 'Sed0015224' => 'sed', 'Sed0016618' => 'sed', 'Sed0016772' => 'sed', 'Sed0017814' => 'sed', 'Sed0018291' => 'sed', 'Sed0018501' => 'sed', 'Sed0021616' => 'sed', 'Sed0025528' => 'sed', 'SEGI_04624' => 'sgi', 'SEGI_10200' => 'sgi', 'SEGI_15636' => 'sgi', 'SEGI_16781' => 'sgi', 'SEGI_31869' => 'sgi', 'SEGI_32853' => 'sgi', 'SGA_v2.0_scaffold151G36753' => 'sas', 'SGA_v2.0_scaffold157G37406' => 'sas', 'SGA_v2.0_scaffold198G41101' => 'sas', 'SGA_v2.0_scaffold20G09257' => 'sas', 'SGA_v2.0_scaffold22G09983' => 'sas', 'SGA_v2.0_scaffold5G03027' => 'sas', 'SGA_v2.0_scaffold5G03059' => 'sas', 'SGA_v2.0_scaffold6G03158' => 'sas', 'SGA_v2.0_scaffold98G29330' => 'sas', 'SHI07449' => 'shi', 'SMO230G0093' => 'smo', 'SMO230G0114' => 'smo', 'SMO232G0131' => 'smo', 'SMO337G0118' => 'smo', 'SMO347G0063' => 'smo', 'Solyc01g096050.4' => 'sly', 'Solyc01g096370.4' => 'sly', 'Solyc05g050560.1' => 'sly', 'Solyc06g083980.3' => 'sly', 'Solyc08g005050.4' => 'sly', 'Solyc08g008600.3' => 'sly', 'Solyc08g076930.1' => 'sly', 'Solyc08g083170.1' => 'sly', 'Solyc10g009270.3' => 'sly', 'Solyc10g009290.1' => 'sly', 'Sopen00g013520' => 'spe', 'Sopen01g039770' => 'spe', 'Sopen05g028990' => 'spe', 'Sopen06g035370' => 'spe', 'Sopen08g001070' => 'spe', 'Sopen08g004440' => 'spe', 'Sopen08g025500' => 'spe', 'Sopen08g031370' => 'spe', 'Sopen10g005050' => 'spe', 'Sopen10g005070' => 'spe', 'Sp1g01020' => 'spa', 'Sp1g28280' => 'spa', 'Sp2g11570' => 'spa', 'Sp2g11630' => 'spa', 'Sp4g28550' => 'spa', 'Sp7g14960' => 'spa', 'Sp7g16240' => 'spa', 'SpUn0036_0040' => 'spa', 'TAR371G0762' => 'tar', 'TAR374G0488' => 'tar', 'TAR375G0001' => 'tar', 'TAR376G0783' => 'tar', 'TAR376G0937' => 'tar', 'TAR629G1367' => 'tar', 'TAR629G2212' => 'tar', 'TAR629G2467' => 'tar', 'TAR636G0516' => 'tar', 'TAR636G0953' => 'tar', 'TAR636G2000' => 'tar', 'THA.LOC104801366' => 'tha', 'THA.LOC104802079' => 'tha', 'THA.LOC104802091' => 'tha', 'THA.LOC104806708' => 'tha', 'THA.LOC104807948' => 'tha', 'THA.LOC104812743' => 'tha', 'THA.LOC104812829' => 'tha', 'THA.LOC104814446' => 'tha', 'THA.LOC104817367' => 'tha', 'THA.LOC104824169' => 'tha', 'THA.LOC104825881' => 'tha', 'THA.LOC104825893' => 'tha', 'THA.LOC104827624' => 'tha', 'THA.LOC104827760' => 'tha', 'Thecc.01G263800' => 'tca', 'Thecc.01G335600' => 'tca', 'Thecc.01G341000' => 'tca', 'Thecc.03G220200' => 'tca', 'Thecc.03G220400' => 'tca', 'Thecc.03G227500' => 'tca', 'Thhalv10000808m.g' => 'esa', 'Thhalv10000853m.g' => 'esa', 'Thhalv10001374m.g' => 'esa', 'Thhalv10007075m.g' => 'esa', 'Thhalv10007139m.g' => 'esa', 'Thhalv10024688m.g' => 'esa', 'Thhalv10025122m.g' => 'esa', 'TPR.G1044' => 'tpr', 'TPR.G20237' => 'tpr', 'TPR.G27757' => 'tpr', 'TPR.G28243' => 'tpr', 'TPR.G28249' => 'tpr', 'TPR.G30158' => 'tpr', 'TPR.G4747' => 'tpr', 'TPR.G5750' => 'tpr', 'TWI12G0196' => 'twi', 'TWI14G0491' => 'twi', 'TWI15G0055' => 'twi', 'TWI15G0861' => 'twi', 'TWI15G0875' => 'twi', 'TWI15G1175' => 'twi', 'TWI18G0487' => 'twi', 'TWI23G1035' => 'twi', 'TWI59G0427' => 'twi', 'TWI59G1052' => 'twi', 'TWI60G0750' => 'twi', 'TWI81G0935' => 'twi', 'unitig_0.g150' => 'ugi', 'unitig_22.g5501' => 'ugi', 'unitig_62.g23790' => 'ugi', 'unitig_62.g23791' => 'ugi', 'unitig_699.g19782' => 'ugi', 'unitig_8.g3920' => 'ugi', 'unitig_899.g14795' => 'ugi', 'vmacro12653' => 'vma', 'vmacro13167' => 'vma', 'vmacro13848' => 'vma', 'vmacro13849' => 'vma', 'vmacro14859' => 'vma', 'VMungo0251G0761' => 'vmu', 'VMungo0331G0125' => 'vmu', 'VMungo0331G1118' => 'vmu', 'VMungo0540G1214' => 'vmu', 'VMungo0540G2148' => 'vmu', 'VMungo0647G0790' => 'vmu', 'VMungo0647G1372' => 'vmu', 'VMungo0647G2117' => 'vmu', 'VMungo1215G2379' => 'vmu', 'Zm00001eb024330' => 'zma', 'Zm00001eb037440' => 'zma', 'Zm00001eb102950' => 'zma', 'Zm00001eb114530' => 'zma', 'Zm00001eb119000' => 'zma', 'Zm00001eb155410' => 'zma', 'Zm00001eb198510' => 'zma', 'Zm00001eb318500' => 'zma', 'Zm00001eb339360' => 'zma', 'Zm00001eb390330' => 'zma' ) $gf_id = 'HOM05D000567' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000567' ) $data_identifier = 'HOM05D000567' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 16, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 9, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 13, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 12, 'fan' => (int) 30, 'fve' => (int) 12, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 19, 'cav' => (int) 6, 'hma' => (int) 11, 'vpl' => (int) 10, 'lal' => (int) 13, 'lonja' => (int) 13, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 21, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 14, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 11, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390330' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1